CDS

Accession Number TCMCG057C10527
gbkey CDS
Protein Id XP_018449141.1
Location complement(join(43762912..43763532,43763657..43764037))
Gene LOC108820644
GeneID 108820644
Organism Raphanus sativus

Protein

Length 333aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018593639.1
Definition PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category H
Description Belongs to the FPP GGPP synthase family
KEGG_TC -
KEGG_Module M00364        [VIEW IN KEGG]
M00366        [VIEW IN KEGG]
KEGG_Reaction R01658        [VIEW IN KEGG]
R02003        [VIEW IN KEGG]
R02061        [VIEW IN KEGG]
KEGG_rclass RC00279        [VIEW IN KEGG]
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko01006        [VIEW IN KEGG]
KEGG_ko ko:K13789        [VIEW IN KEGG]
EC 2.5.1.1        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
2.5.1.10        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
2.5.1.29        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko00900        [VIEW IN KEGG]
ko01100        [VIEW IN KEGG]
ko01110        [VIEW IN KEGG]
ko01130        [VIEW IN KEGG]
map00900        [VIEW IN KEGG]
map01100        [VIEW IN KEGG]
map01110        [VIEW IN KEGG]
map01130        [VIEW IN KEGG]
GOs GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004659        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006629        [VIEW IN EMBL-EBI]
GO:0006720        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008299        [VIEW IN EMBL-EBI]
GO:0008610        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009579        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0016765        [VIEW IN EMBL-EBI]
GO:0034357        [VIEW IN EMBL-EBI]
GO:0042214        [VIEW IN EMBL-EBI]
GO:0042651        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043692        [VIEW IN EMBL-EBI]
GO:0043693        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044255        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044436        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046246        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGCTGTTTAGCGCTGCTTCAGCAACTCCACTCCGCTATAGTGGTTTAGTTGCGGAGAAACCAATTCCAAAGCGTATGCGTATGCGTATGCGTATGCGTATGCGGGGGATGAAACAATCAATTCGGATTGGGGCAACATCATCGACGTCGAATAATAAGTTCGATCTGAGGAAGTATTGGAGAAGCCTAATAAGGGAGATAAACCAGAAGCTGGAGGAAGCGATACCAGTTAAGTACCCTGCGGGGATCTATGAGGCGATGAGATACTCAGTCCTAGCTAAAGGCGCCAAGCGTGCCCCTCCTGTTATGTGTGTCGCCGCCTGCGAGCTCTTCGGTGGCCATCGTCTCGCCGCTTTCCCCACCGCATGTGCCCTTGAAATGGTCCACGCGGCTTCGCTTATTCACGATGACCTCCCCTGTATGGACGATGATCCTGTCCGCAGAGGAAAGCCATCTAACCACACTGTCTTCGGTGCTGACATGGCCATTCTCGCTGGCGATGCCCTCTTCCCTCTTGGCTTCCACCACATTGTTTCTCTCACCCCTCCTCACCTTGTTCCCCCTTCCACCATCCTCCGTATCATCTCCGAGATTGCCCGCACCGTCGGCTCTACCGGTATGGCTGCTGGTCAGTACGTTGACCTCGAAGGAGGCCCCTTTCCTCTTTCCTTTGCTCACGAGAAGAAATTCGGTGCCATGGGGGAGTGCTCTGCCGTCTGTGGTGGTCTCTTGGGTGGTGCCACTGATGATGAGCTTCAGTCTCTCAGATTGTACGGCAGAGCTGTTGGGATGCTCTATCAGGTGGTGGATGACATCACACTCGACAATAACAACTTTGCGGGAGCCTTTGGAACAGAGAGGGCTATGGAAATGGCAGATGAGCTTAGTGTAAAGGCGAAGAAGGAGCTGCGAGTTTTTGACAAGTATGGAGAATCATCAGTTGCTCCTCTCTACAGTTTCGTTGACTACGCTGCTCACCGAGACTTCCTTCTTCATCTCTGA
Protein:  
MLFSAASATPLRYSGLVAEKPIPKRMRMRMRMRMRGMKQSIRIGATSSTSNNKFDLRKYWRSLIREINQKLEEAIPVKYPAGIYEAMRYSVLAKGAKRAPPVMCVAACELFGGHRLAAFPTACALEMVHAASLIHDDLPCMDDDPVRRGKPSNHTVFGADMAILAGDALFPLGFHHIVSLTPPHLVPPSTILRIISEIARTVGSTGMAAGQYVDLEGGPFPLSFAHEKKFGAMGECSAVCGGLLGGATDDELQSLRLYGRAVGMLYQVVDDITLDNNNFAGAFGTERAMEMADELSVKAKKELRVFDKYGESSVAPLYSFVDYAAHRDFLLHL